"Effect of pH buffering capacity and sources of dietary sulfur on rumen fermentation, sulfide production, methane production, sulfate reducing bacteria, and total Archaea in in vitro rumen cultures" BIORESOURCE TECHNOLOGY 186 1 (2015) 25-33-25-33
"Fermentative metabolism of an anaerobic, thermophilic consortium on plant polymers and commercial paper samples" BIOMASS & BIOENERGY 75 (2015) 11-22-11-22
"Effects of garlic oil, nitrate, saponin and their combinations supplemented to different substrates on in vitro fermentation, ruminal methanogenesis, and abundance and diversity of microbial populations" Journal of Applied Microbiology 119 1 (2015) 127-138-127-138
"Essential oils affect populations of some rumen bacteria in vitro as revealed by microarray (RumenBactArray) analysis" FRONTIERS IN MICROBIOLOGY 6 (2015) 297-297
"Reducing microbial ureolytic activity in the rumen by immunization against urease therein" BMC VETERINARY RESEARCH 11 (2015) 94-94
"Reducing microbial ureolytic activity in the rumen by immunization against urease therein" BMC Veterinary Research 11 (2015) 94-94
"RUMINANT NUTRITION SYMPOSIUM: How to use data on the rumen microbiome to improve our understanding of ruminant nutrition." Journal of animal science 93 4 (2015) 1450-1470-1450-1470
"Construction and Evaluation of a Genetic Construct for Specific Detection and Measurement of Propionate by Whole-Cell Bacteria" BIOTECHNOLOGY AND BIOENGINEERING 112 2 (2015) 280-287-280-287
"Comparison of the microbial communities in solid-state anaerobic digestion (SS-AD) reactors operated at mesophilic and thermophilic temperatures" APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 99 2 (2015) 969-980-969-980
"Prebiotic Oligosaccharides: Comparative Evaluation Using In Vitro Cultures of Infants' Fecal Microbiomes" APPLIED AND ENVIRONMENTAL MICROBIOLOGY 80 23 (2014) 7388-7397-7388-7397
"Biological conversion of methane to liquid fuels: Status and opportunities" BIOTECHNOLOGY ADVANCES 32 8 (2014) 1460-1475-1460-1475
"Number of PCR Cycles and Magnesium Chloride Concentration Affect Detection of tet Genes Encoding Ribosomal Protection Proteins in Swine Manure" Advances in Microbiology 4 (2014) 780-787-780-787
"Spatial and temporal variations of microbial community in a mixed plug-flow loop reactor fed with dairy manure" MICROBIAL BIOTECHNOLOGY 7 4 (2014) 332-346-332-346
"Variations in 16S rRNA-based Microbiome Profiling between Pyrosequencing Runs and between Pyrosequencing Facilities" JOURNAL OF MICROBIOLOGY 52 5 (2014) 355-365-355-365
"Effects of microbial and non-microbial factors of liquid anaerobic digestion effluent as inoculum on solid-state anaerobic digestion of corn stover" BIORESOURCE TECHNOLOGY 157 (2014) 188-196-188-196
"Combinations of nitrate, saponin, and sulfate additively reduce methane production by rumen cultures in vitro while not adversely affecting feed digestion, fermentation or microbial communities" BIORESOURCE TECHNOLOGY 155 (2014) 129-135-129-135
"Effects of vanillin, quillaja saponin, and essential oils on in vitro fermentation and protein-degrading microorganisms of the rumen" APPLIED MICROBIOLOGY AND BIOTECHNOLOGY 98 2 (2014) 897-905-897-905
"The structures of the colonic mucosa-associated and luminal microbial communities are distinct and differentially affected by a prolonged murine stressor." Gut microbes 5 6 (2014) 748-760-748-760
"Intestinal microbiome of poultry and its interaction with host and diet." Gut microbes 5 1 (2014) 108-119-108-119
"Effective reduction of enteric methane production by a combination of nitrate and saponin without adverse effect on feed degradability, fermentation, or bacterial and archaeal communities of the rumen" BIORESOURCE TECHNOLOGY 148 (2013) 352-360-352-360
"Evaluation of system performances and microbial communities of two temperature-phased anaerobic digestion systems treating dairy manure" BIORESOURCE TECHNOLOGY 143 (2013) 431-438-431-438
"Evaluation of system performance and microbial communities of a temperature-phased anaerobic digestion system treating dairy manure: Thermophilic digester operated at acidic pH" BIORESOURCE TECHNOLOGY 142 (2013) 625-632-625-632
"Effects of gas composition in headspace and bicarbonate concentrations in media on gas and methane production, degradability, and rumen fermentation using in vitro gas production techniques" JOURNAL OF DAIRY SCIENCE 96 7 (2013) 4592-4600-4592-4600
"Reactor performance and microbial community dynamics during solid-state anaerobic digestion of corn stover at mesophilic and thermophilic conditions" BIORESOURCE TECHNOLOGY 136 (2013) 574-581-574-581
"Isolation and characterization of two thermophilic cellulolytic strains of Clostridium thermocellum from a compost sample" Journal of Applied Microbiology 114 4 (2013) 1001-1007-1001-1007
"Effects of coconut and fish oils on ruminal methanogenesis, fermentation, and abundance and diversity of microbial populations in vitro." Journal of dairy science 96 3 (2013) 1782-1792-1782-1792
"Effects of coconut and fish oils on ruminal methanogenesis, fermentation, and abundance and diversity of microbial populations in vitro" Journal of Dairy Science 96 3 (2013) 1782-1792-1782-1792
"Suppression of methanogenesis in cellulose-fed microbial fuel cells in relation to performance, metabolite formation, and microbial population." Bioresource technology 129 (2013) 281-288-281-288
"Suppression of methanogenesis in cellulose-fed microbial fuel cells in relation to performance, metabolite formation, and microbial population." Bioresource technology 129 (2013) 281-288-281-288
"Comparison of different liquid anaerobic digestion effluents as inocula and nitrogen sources for solid-state batch anaerobic digestion of corn stover" WASTE MANAGEMENT 33 1 (2013) 26-32-26-32
"Effects of quillaja and yucca saponins on communities and select populations of rumen bacteria and archaea, and fermentation in vitro" JOURNAL OF APPLIED MICROBIOLOGY 113 6 (2012) 1329-1340-1329-1340
"Effects of Essential Oils on Methane Production and Fermentation by, and Abundance and Diversity of, Rumen Microbial Populations" APPLIED AND ENVIRONMENTAL MICROBIOLOGY 78 12 (2012) 4271-4280-4271-4280
"Estrogen status alters tissue distribution and metabolism of selenium in female rats" JOURNAL OF NUTRITIONAL BIOCHEMISTRY 23 6 (2012) 532-538-532-538
"Quantitative analysis of intestinal bacterial populations from term infants fed formula supplemented with fructo-oligosaccharides" Journal of Pediatric Gastroenterology and Nutrition (2012)
"Persistence of resistance to erythromycin and tetracycline in swine manure during simulated composting and lagoon treatments" Microbial E. cology 63 1 (2012) 32-40-32-40
"Comparison of Bacterial Profiles of Fish between Storage Conditions at Retails Using DGGE and Banding Pattern Analysis: Consumer’s Perspective" Food and Nutrition Sciences 3 (2012) 190-200-190-200
"Quantitative comparisons of select cultured and uncultured microbial populations in the rumen of cattle fed different diets." Journal of animal science and biotechnology 3 1 (2012) 28-?-28-?
"Effects of nitrate on methane production, fermentation, and microbial populations in in vitro ruminal cultures" BIORESOURCE TECHNOLOGY 103 1 (2012) 173-179-173-179
"Shifts in microbial community structure of granular and liquid biomass in response to changes to infeed and digester design in anaerobic digesters receiving food-processing wastes" Bioresource Technology in press (2012)
"Hydrogen and volatile fatty acid production during fermentation of cellulosic substrates by a thermophilic consortium at 50 and 60 degrees C" BIORESOURCE TECHNOLOGY 104 (2012) 424-431-424-431
"Estrogen status alters tissue distribution and metabolism of selenium in female rats" The Journal of Nutritional Biochemistry Epub ahead of print (2011)
"Effects of methanogenic inhibitors on methane production and abundances of methanogens and cellulolytic bacteria in in-vitro ruminal cultures" Applied and Environmental Microbiology 77 8 (2011) 2634-2639-2634-2639
"Manipulation of rumen fermentation and ecology of swamp buffalo by coconut oil and garlic powder supplementation" Livestock Science 135 1 (2011) 84-92-84-92
"Effect of ruminal pulse dose of polyunsaturated fatty acids on ruminal microbial populations and duodenal flow and milk profiles of fatty acids" Journal of Dairy Science 94 6 (2011) 2977-2985-2977-2985
"Impact of monensin on rumen microbiota and its stochastic succession" JOURNAL OF DAIRY SCIENCE 93 (2010) 427-427-427-427
"Effect of external resistance on bacterial diversity and metabolism in cellulose-fed microbial fuel cells" Bioresource Technology 102 1 (2010) 278-283-278-283
"Interrelations between the microbiotas in the litter and the intestines of commercial broiler chickens" Applied and Environmental Microbiology 76 19 (2010) 6572-6582-6572-6582
"Occurrence and persistence of erythromycin resistance genes (erm) and tetracycline resistance genes (tet) in waste treatment systems on swine farms" Microbial Ecology 60 3 (2010) 479-486-479-486
"Novel glycoside hydrolases from a metagenome library of the rumen of Chinese Holstein dairy cows" Applied and Environmental Microbiology 76 19 (2010) 6701-6705-6701-6705
"Investigating unsaturated fat, monensin, or bromoethanesulfonate in continuous cultures retaining ruminal protozoa. II. Interaction of treatment and presence of protozoa on prokaryotic communities" Journal of Dairy Science 92 8 (2009) 3861-3873-3861-3873
"Technical note: Occurrence in fecal microbiota of genes conferring resistance to both macrolide-lincosamide-streptogramin B and tetracyclines concomitant with feeding of beef cattle with tylosin" Journal of Animal Science 86 12 (2008) 2385-2391-2385-2391
"Electricity generation from cellulose by rumen microorganisms in microbial fuel cells" Biotechnology and Bioengineering 97 6 (2007) 1398-1407-1398-1407
"Application of recent DNA/RNA-based techniques in rumen ecology" Asian-Australian Journal of Animal Science 20 2 (2007) 283-294-283-294
"Assessment of ruminal bacterial populations and protozoal generation time in cows fed different methionine sources" Journal of Dairy Science 90 2 (2007) 798-809-798-809
"Quantitative assessment of tetracycline resistance gene pool in cheese samples by real-time TaqMan® PCR" Applied and Environmental Microbiology 73 5 (2007) 1676-1677-1676-1677
"Development and application of real-time PCR assays for quantification of erm genes conferring resistance to macrolide-lincosamides-streptogramin B in livestock manure and manure management systems" Applied and Environmental Microbiology 73 14 (2007) 4407-4416-4407-4416
"Evaluation of a real-time PCR assay quantifying the ruminal pool size and duodenal flow of protozoal nitrogen" Journal of Dairy Science 88 6 (2005) 2083-2095-2083-2095
"Development and application of real-time PCR assays for quantification of genes encoding tetracycline resistance" Applied and Environmental Microbiology 71 11 (2005) 6926-6933-6926-6933
"Serial analysis of ribosomal sequence tags (SARST): a high-throughput method for profiling complex microbial communities" Environmental Microbiology 6 2 (2004) 131-144-131-144
"Development of an assay to quantify rumen ciliate protozoal biomass in cows using real-time PCR" Journal of Nutrition 134 12 (2004) 3378-3384-3378-3384
"Degradation of polycyclic aromatic hydrocarbons at low temperature under aerobic and nitrate-reducing conditions in enrichment cultures from northern soils" Applied and Environmental Microbiology 69 1 (2003) 275-284-275-284
"Stability of the bacterial community in a pulp mill effluent treatment system during normal operation and a system shutdown" Water Research 37 20 (2003) 4873-4884-4873-4884
"Technical note: Specific PCR amplification of protozoan 18S rDNA sequences from DNA extracted from ruminal samples of cows" Journal of Animal Science 81 3 (2003) 812-815-812-815
"Bioaugmentation with the resin acid-degrading bacterium Zoogloea resiniphila DhA-35 to counteract pH stress in an aerated lagoon treating pulp and paper mill effluent" Water Research 36 11 (2002) 2793-2801-2793-2801
"Bioaugmentation with resin acid-degrading bacteria enhances resin acid removal in sequencing batch reactors treating pulp mill effluents" Water Research 35 4 (2001) 883-890-883-890
"Monitoring the size and metabolic activity of the bacterial community during biostimulation of fuel-contaminated soil using competitive PCR and RT-PCR" Microbial Ecology 42 3 (2001) 267-273-267-273
"Population dynamics and metabolic activity of Pseudomonas abietaniphila BKME-9 within pulp mill wastewater microbial communities assayed by competitive PCR and RT-PCR" FEMS Microbiology Ecology 38 1 (2001) 21-31-21-31
"Bacterial diversity and community structure in an aerated lagoon revealed by ribosomal intergenic spacers analyses and 16S ribosomal DNA sequencing" Applied and Environmental Microbiology 67 4 (2001) 1565-1574-1565-1574
"DNA-based and culture-based characterization of a hydrocarbon-degrading consortium enriched from arctic soil" Canadian Journal of Microbiology 47 12 (2001) 1107-1115-1107-1115
"Apparent contradiction: psychrotolerant bacteria from hydrocarbon-contaminated Arctic tundra soils that degrade diterpenoids synthesized by trees" Applied and Environmental Microbiology 66 12 (2000) 5148-5154-5148-5154
"Dechlorination of polychlorinated methanes by a sequential methanogenic-denitrifying bioreactor system" Applied Microbiology and Biotechnology 53 4 (2000) 484-489-484-489
"Inhibition of methanogenesis by C1- and C2-polychlorinated aliphatic hydrocarbons" Environmental Toxicology and Chemistry 19 9 (2000) 2212-2217-2212-2217
"Lessons learned from Sphingomonas species that degrade abietane diterpenoids" Journal of Industrial Microbiology and Biotechnology 23 4-5 (2000) 374-379-374-379
"Biochemistry and ecology of resin acid biodegradation in pulp and paper mill effluent treatment systems" Water Science and Technology 40 11-12 (1999) 273-280-273-280
"Recent advances in understanding resin acid biodegradation: microbial diversity and metabolism" Archives of Microbiology 172 3 (1999) 131-138-131-138
"Isolation and characterization of thermophilic bacteria capable of degrading dehydroabietic acids" Canadian Journal of Microbiology 45 6 (1999) 513-520-513-520
"Occurrence of two resin acid-degrading bacteria and a gene encoding resin acid biodegradation in pulp and paper mill effluent biotreatment systems assayed by PCR" Microbial Ecology 38 2 (1999) 114-125-114-125
"Killing two birds with one stone: simultaneous extraction of DNA and RNA from activated sludge biomass" Canadian Journal of Microbiology 45 3 (1999) 269-272-269-272
"Chloroform dechlorination by a wastewater methanogenic consortium and cell extracts of Methanosarcina barkeri" Water Research 31 8 (1997) 1879-1886-1879-1886
"Volume ratios between the thermophilic and the mesophilic digesters of a temperature-phased anaerobic digestion system affect their performance and microbial communities" New Biotechnology
"Freshwater Microbiome: Environmental and Public Health Implications" Plos One
"A meta-analysis of global diversity of anaerobic gut fungi" Frontiers in Microbiology
"Effects of nitrate on methane production, fermentation, and microbial populations in in vitro ruminal cultures" Bioresource Technology
"Changes in diversity of cultured bacteria resistant to erythromycin and tetracycline in swine manure during simulated composting and lagoon storage" Letters in Applied Microbiology
"The Prevalence and Diversity of Shiga Toxin-Producing Escherichia coli in Canada Geese in Western Lake Erie Region" Zoonoses and Public Health
"Rumen Epithelial Gene Expression and Quantification of Select Rumen Microbial Populations in Holstein Bull Calves Fed an Aspergillus oryzae Fermentation Extract" Plos One
"Effects of different physically fibers on rumen microbial populations of dairy cattle" Animal
"Simultaneous power generation and desalination of microbial fuel cells using Nanochloropsis salian (marine algae) vs potassium ferricyanide as catholytes" Journal of Power sources
"Relative importance of Microcystis abundance and diversity in determining microcystin dynamics in Lake Erie coastal wetland and downstream beach water" Journal of Applied Microbiology
"Effect of organic loading on the microbiota in a temperature-phased anaerobic digestion (TPAD) system co-digesting dairy manure and waste whey" Applied Microbiology and Biotechnology
"Serial Analysis of V1 Ribosomal Sequence Tags" In Encyclopedia of Metagenomics. Edited by Nelson K.. 2015.
"Terrestrial Vertebrate Animal Metagenomics, Domesticated Caprinae" In Encyclopedia of Metagenomics. Edited by Highlander, S, Rodriguez-Valera, F, White BA. 2015.
"Use of Bacterial Artificial Chromosomes in Metagenomic Studies" In Encyclopedia of Metagenomics. Edited by Nelson, K. 2015.
"Antimicrobial resistance arising from food-animal productions and its mitigation" In Antibiotic Resistance. Edited by Pan, M. 2012.
"The animal and human gut ecosystems" In Foodborne Microbes: Shaping the Host Ecosystem. Edited by L.A. Jaykus, H. Wang, and L. Schlesinger. 2009.
"Characterization and quantification of microbes in ruminants" In Ruminant Nutrition and Physiology. Edited by K. Sejrsen, T. Hvelplund, and M.O. Nielsen. 2006.
"Nucleic acid extraction, oligonucleotide probes and PCR methods" In Methods in Gut Microbial Ecology for Ruminants. Edited by H.P.S. Makkar and C.S. McSweeney. 2005.
"SARST, serial analysis of ribosomal sequence tags" In Molecular Microbial Ecology Manual. Edited by G.G. Kowalchuk, F.J. de Bruijn, I.M. Head, A.D. Akkermans, and J.D. van Elsas. 2005.
"New insights into the diet-microbiome-productivity relationship in dairy cows" The 4th International Symposium on Dairy Cow Nutrition and Milk Quality 2015.
"Towards a better understanding of rumen microbiota and animal performance" Proceedings of the 3rd International Symposium on Dairy Cow Nutrition and Milk Quality 2013.
"Molecular and metagenomic studies on the ruminal microbiome: new capabilities and new knowledge" The 3rd International Conference on Sustainable Animal Agriculture for Developing Countries (SAADC2011) 2011.
"Metagenomics of rumen microbiome with regard to nutrient metabolism" The 2nd International Symposium on Dairy Cow Nutrition and Milk Quality 2011.
"Reduction of resistance to macrolide-lincosamide-streptogramin B and tetracycline during thermophilic composting of swine manures" International ORBIT 2009: Biomass and Organic Waste as Sustainable Resources 2009.
"PCR quantification of antibiotic resistance genes in composted and liquid stored manures" ORBIT 2008: Moving organic waste cycling towards resource management and for biobased economy 2008.
"A molecular view of the intestinal microbiota in poultry" XI International Poultry Seminar Series 2008.
"The predator within – protozoa in the rumen and the impact on rumen nutrition" The 6th Joint symposium of China-Korea-Japan on rumen metabolism and physiology 2007.
"Antimicrobial resistance genes in livestock production systems: concept and consequences" Herbivore nutrition for the development of efficient, safe and sustainable livestock production 2007.
"Bacterial diversity and community structure in pulp mill effluent treatment systems determined by ribosomal intergenic spacer analysis." 221st American Chemical Society Annual Meeting 2001.
"Peeking into the black box: resin acid-degrading microbial populations in treatment systems for pulp mill effluent" Science and Practice: Sustaining the Boreal Forest 1999.
"Microbial population dynamics of resin acid-degrading bacteria in biotreatment systems of pulp mill effluents" Science and Practice: Sustaining the Boreal Forest 1999.
"Enhancement of resin acid removal in sequencing batch reactors treating pulp mill effluents by bioaugmentation with resin acid-degrading bacteria" Annual Conference of Canadian Pulp and Paper Association (Pacific Coast Branch) 1999.
"Ecological studies of resin acid-degrading bacteria in biological treatment systems using molecular probes" 7th International Conference on Biotechnology in Pulp and Paper Industry 1998.
Yu, Z. M. Kim, and M. Morrison. Rumen Microbiome Microarray (RumenArray). Filed Jan 2011
Yu, Z. S. Wei, L. Lilburn, and M. Morrison. Poultry Intestinal Tract Chip (PITChip). Filed Jan 2011
Yu, Z. and M. Morrison. Serial Analysis of Ribosomal Seqeunce Tags. 085078808 Filed Jan 2009
"Bacterial and archaeal diversity in anaerobic digesters as affected by feedstocks and digester designs. Leipzig, Germany." In I International Conference on Biogas Microbiology. 2011.
"Molecular biology techniques used to analyze ruminal microorganisms." 2011.
"Molecular and metagenomic studies on the ruminal microbiome: new capabilities and new knowledge." In The 3rd International Conference on Sustainable Animal Agriculture for Developing Countries. 2011.
"Metagenomics of rumen microbiome with regard to nutrient metabolism." In 2nd International Symposium on Dairy Cow Nutrition and Milk Quality. 2011.
"Rumen Metagenomics - new capabilities, new knowledge and new opportunities to modulate ruminal microbiome." 2011.
"The study of ruminal microbial ecology by using molecular technique." In A training workshop. 2010.
"Rumen microorganisms and ruminant nutrition." 2009.
"Reduction of resistance to macrolide-lincosamide-streptogramin B and tetracycline during thermophilic composting of swine manures." In ORBIT 2009. 2009.
"Molecular analysis of ruminal microbiome." 2009.
"2009 census on microbial diversity in the rumen." In Inaugural ASAS-CAAV Asian Pacific Rim Conference. 2009.
"Molecular analysis of the intestinal microbiota of chickens and turkeys." In XI International Seminar on Poultry Production and Pathology. 2008.
"A molecular and (meta)genomic view of the microbiomes in intestinal tract and anaerobic digesters." 2008.
"Dietary impact on the intestinal microbiota of chickens and turkeys." In XI International Seminar on Poultry Production and Pathology. 2008.
"Molecular biology techniques and their application to studies of ruminal ecosystems." 2008.
"Molecular ecological analysis of the ruminal microbial diversity." In The Royal Golden Jubilee Ph.D. Program Conference IX. 2008.
"The predator within â€“ protozoa in the rumen and the impact on rumen nutrition." In The 6th Joint symposium of China-Korea-Japan on rumen metabolism and physiology. Hangzhou, China, 2007.. 2007.
"Antimicrobial resistance genes in livestock production systems: concept and consequences." In The 7th International Symposium on Nutrition of Herbivores (ISNH7). 2007.
"Microbial diversity in the gastrointestinal tract as revealed by new molecular biology techniques." In The KLASS Seminar Series, Kemin Industries, Inc.. 2006.
"Quantitative assessment of tetracycline resistance originating from food-animal production by real-time PCR assays." In Agriculture's Role in Managing Antimicrobial Resistance Conference. 2005.
"Improved serial analysis of ribosomal sequence tags (iSARST): An innovative technology for efficient analysis of rumen microbiomes." In 4th INRA-RRI Symposium on Gut Biology: Concerns and Answers to Food Safety, Health and Environment. 2004.
"Microbial diversity in the rumen." 2004.