Research: 2015 Publications

2015 Publications

Almeida AK, Resende KT, St-Pierre N, Silva SP, Soares DC, Fernandes MHMR, Souza AP, Silva NCD, Lima ARC, Teixeira IAMA. 2015. Energy requirements for growth in male and female saanen goats. J Anim Sci 93(8):3932-40.

Ahn J, Shin S, Suh Y, Park JY, Hwang SS, Lee K. Identification of the avian RBP7 gene as a new adipose-specific gene and RBP7 promoter-driven GFP expression in adipose tissue of transgenic quail. PLoS One. 10:e0124768.

Artuso-Ponte V, Moeller S, Rajala-Schultz P, Medardus JJ, Munyalo J, Lim K, Gebreyes WA. 2015. Supplementation with quaternary benzo(c) phenanthridine alkaloids decreased salivary cortisol and salmonella shedding in pigs after transportation to the slaughterhouse. Foodborne Pathogens and Disease 12(11):891-7.

Boerman JP, Firkins JL, St-Pierre NR, Lock AL. 2015. Intestinal digestibility of long-chain fatty acids in lactating dairy cows: A meta-analysis and meta-regression. J Dairy Sci 98(12):8889-903.

Booyse DG, Dehority BA, Myburgh JG. 2015. The effect of acid drinking water on rumen protozoa in the blesbok (damaliscus dorcas phillipsi). Zootaxa 4052(5):577-82.

Caetano-Anolles K, Seo M, Rodriguez-Zas S, Oh JD, Han JY, Lee K, Park TS, Shin S, Jiao Jiao Z, Ghosh M, Jeong DK, Cho S, Kim H, Song KD, Lee HK. Comprehensive Identification of Sexual Dimorphism-Associated Differentially Expressed Genes in Two-Way Factorial Designed RNA-Seq Data on Japanese Quail (Coturnix coturnix japonica). PLoS One. 29;10(9):e0139324.

Carver SM, Nelson MC, Yu Z, Tuovinen OH. 2015. Fermentative metabolism of an anaerobic, thermophilic consortium on plant polymers and commercial paper samples. Biomass & Bioenergy 75:11-22.

Choi Y, Davis ME, Chung H. 2015. Effects of genetic variants in the promoter region of the bovine adiponectin (ADIPOQ) gene on marbling of hanwoo beef cattle. Meat Sci 105:57-62.

Chung HY, Choi YJ, Park HN, Davis ME. 2015. Associations between genetic variants in the promoter region of the insulin-like growth factor-1 (IGF1) gene and blood serum IGF1 concentration in hanwoo cattle. Genetics and Molecular Research 14(2):3026-35.

Cobellis G, Trabalza-Marinucci M, Yu Z. 2015. Critical evaluation of essential oils as rumen modifiers in ruminant nutrition: a review. Science of the Total Environment, 545-546(1): 556-568.

Costa-Lima BRC, Suman SP, Li S, Beach CM, Silva TJP, Silveira ETF, Bohrer BM, Boler DD. 2015. Dietary ractopamine influences sarcoplasmic proteome profile of pork longissimus thoracis. Meat Sci 103:7-12.

Cray JA, Stevenson A, Ball P, Bankar SB, Eleutherio ECA, Ezeji TC, Singhal RS, Thevelein JM, Timson DJ, Hallsworth JE. 2015. Chaotropicity: A key factor in product tolerance of biofuel-producing microorganisms. Curr Opin Biotechnol 33:228-59.

Day ML. 2015. State of the art of GnRH - based timed AI in beef cattle. Anim Reprod 12(3):473-478.

Denton BL, Diese LE, Firkins JL, Hackmann TJ. 2015. Accumulation of reserve carbohydrate by rumen protozoa and bacteria in competition for glucose. Appl Environ Microbiol 81(5):1823-9.

Dodson MV, Allen RE, Du M, Bergen WG, Velleman SG, Poulos SP, Fernyhough-Culver M, Wheeler MB, Duckett SK, Young MRI, and others. 2015. INVITED REVIEW: Evolution of meat animal growth research during the past 50 years: Adipose and muscle stem cells. J Anim Sci 93(2):457-81.

Esselburn KM, Hill TM, Bateman,H.G.,,II, Fluharty FL, Moeller SJ, O'Diam KM, Daniels KM. 2015. Examination of weekly mammary parenchymal area by ultrasound, mammary mass, and composition in holstein heifers reared on 1 of 3 diets from birth to 2 months of age. J Dairy Sci 98(8):5280-93.

Firkins JL,  Fowler CM, Devillard E,  Bequette BJ. 2015. Kinetics of microbial methionine metabolism in continuous cultures administered different methionine sources. J. Dairy Sci.  98(2):1178–1194.

Firkins JL, Yu Z. 2015. RUMINANT NUTRITION SYMPOSIUM: How to use data on the rumen microbiome to improve our understanding of ruminant nutrition.  Journal of Animal Science. 93(4):1450-1470.

Fowler CM, Plank JE,  Devillard E,  Bequette BJ, Firkins JL. 2015. ssessing the ruminal action of the isopropyl ester of 2-hydroxy-4-(methylthio) butanoic acid in continuous and batch cultures of mixed ruminal microbes. J. Dairy Sci. 98(2):1167–1177.

Gott PN, Hogan JS, Weiss WP. 2015. Effects of various starch feeding regimens on responses of dairy cows to intramammary lipopolysaccharide infusion. J Dairy Sci 98(3):1786-96.

Gowanlock DW, Mahan DC, Jolliff JS, Hill GM. 2015. Evaluating the influence of national research council levels of copper, iron, manganese, and zinc using organic (bioplex) minerals on resulting tissue mineral concentrations, metallothionein, and liver antioxidant enzymes in grower-finisher swine diets. J Anim Sci 93(3):1149-56.

Grinberg IR, Yin G, Borovok I, Miller MEB, Yeoman CJ, Dassa B, Yu Z, Mizrahi I, Flint HJ, Bayer EA, and others. 2015. Functional phylotyping approach for assessing intraspecific diversity of ruminococcus albus within the rumen microbiome. FEMS Microbiol Lett 362(3).

Hackmann TJ and Firkins JL. 2015. Electron transport phosphorylation in rumen butyrivibrios: Unprecedented ATP yield for glucose fermentation to butyrate. Frontiers in Microbiology 6:622.

Hackmann TJ, Firkins JL. 2015. Maximizing efficiency of rumen microbial protein production. Front. Microbiol. 6:1-16.

Haerter CJ, Castagnino DS, Rivera AR, Lima LD, Silva HGO, Mendonca AN, Bonfim GF, Liesegang A, St-Pierre N, Teixeira IAMA. 2015. Mineral metabolism in singleton and twin-pregnant dairy goats. Asian-Australasian Journal of Animal Sciences 28(1):37-49.

Harding RL, Clark DL, Halevy O, Coy CS, Yahav S, Velleman SG. The effect of temperature on apoptosis and adipogenesis on skeletal muscle satellite cells derived from different muscle types. Physiological Reports. 2015;3(9):e12539. doi:10.14814/phy2.12539.

Harstine BR, Maquivar M, Helser LA, Utt MD, Premanandan C, DeJarnette JM, Day ML. 2015. Effects of dietary energy on sexual maturation and sperm production in holstein bulls. J Anim Sci 93(6):2759-66.

Hong J, Kim D, Cho K, Sa S, Choi S, Kim Y, Park J, Schmidt GS, Davis ME, Chung H. 2015. Effects of genetic variants for the swine FABP3, HMGA1, MC4R, IGF2, and FABP4 genes on fatty acid composition. Meat Sci 110:46-51.

Huff GR, Huff WE, Rath NC, Anthony NB, Nestor KE. 2015. Ascorbic acid differentially affects stress response and resistance to colibacillosis in turkeys from genetic lines differing in growth rate. Avian Dis 59(2):323-8.

Keim SA, Kulkarni MM, McNamara K, Geraghty SR, Billock RM, Ronau R, Hogan JS, Kwiek JJ. 2015. Cow’s milk contamination of human milk purchased via the internet. Pediatrics 135(5):1-6.

Kittelmann S, Devente SR, Kirk MR, Seedorf H, Dehority BA, Janssen PH. 2015. Phylogeny of intestinal ciliates, including charonina ventriculi, and comparison of microscopy and 18S rRNA gene pyrosequencing for rumen ciliate community structure analysis. Appl Environ Microbiol 81(7):2433-44.

Kwasek, K, Wick, M, Dabrowski, K. 2015. Muscle protein characteristics and its association with faster growth in percids and other teleosts. In Biology and Culture of Percid Fishes. Kestemont, Ed.

Li Y, Abraham C, Nelson MC, Chen P, Graf J, Yu Z. 2015. Effect of organic loading on the microbiota in a temperature-phased anaerobic digestion (TPAD) system co-digesting dairy manure and waste whey. Appl Microbiol Biotechnol 99(20):8777-92.

Li Y and Yu Z. 2015. Construction and evaluation of a genetic construct for specific detection and measurement of propionate by whole-cell bacteria. Biotechnol Bioeng 112(2):280-7.

Li Y, Nelson MC, Chen P, Graf J, Li Y, Yu Z. 2015. Comparison of the microbial communities in solid-state anaerobic digestion (SS-AD) reactors operated at mesophilic and thermophilic temperatures. Appl Microbiol Biotechnol 99(2):969-80.

Lilburn MS and Loeffler S. 2015. Early intestinal growth and development in poultry. Poult Sci 94(7):1569-76.

Liu K, Atiyeh HK, Pardo-Planas O, Ezeji TC, Ujor V, Overton JC, Berning K, Wilkins MR, Tanner RS. 2015. Butanol production from hydrothermolysis-pretreated switchgrass: Quantification of inhibitors and detoxification of hydrolyzate. Bioresour Technol 189:292-301.

Liu K, Atiyeh H, Pardo-Planas O, Ramachandriya OK, Wilkins M R, Ezeji TC, Ujor V, Tanner RS. (2015). Process Development for Biological Production of Butanol from Eastern Redcedar. Bioresource Technology 176:88-97.

Mariano AP, Ezeji TC, and N Qureshi (2015) Butanol (Biofuel) Production by Fermentation: Efficient Bioreactors. Chapter in Commercializing Biobased Products: Opportunities, Challenges, Benefits, and Risks. (Ed. Snyder SW) Royal Society of Chemistry (RSC), Cambridge, CB4 0WF, UK.

McCutcheon JS, Morton LW, Zerby HN, Loerch SC, Miller L, Fluharty FL. 2015. Ohio livestock producers' perceptions of producing and marketing grass-based beef and lamb. Agroecology and Sustainable Food Systems 39(4):367-90.

Morris A, Shanmugasundaram R, McDonald J, Selvaraj RK. 2015. Effect of in vitro and in vivo 25-hydroxyvitamin D treatment on macrophages, T cells, and layer chickens during a coccidia challenge. J. Anim. Sci. 93.

Morrow M, Ottobre J, Ottobre A, Neville P, St-Pierre N, Dreschel N, Pate JL. 2015. Breed-dependent differences in the onset of fear-related avoidance behavior in puppies. Journal of Veterinary Behavior-Clinical Applications and Research 10(4):286-94.

Pairis-Garcia, M.D., A.K. Johnson, B. Kukanich, L. Wulf, S.T. Millman, K.J. Stalder, L.A. Karriker and J.F. Coetzee. 2015. Pharmacokinetics of meloxicam in mature swine after intravenous and oral administration. Journal of Veterinary Pharmacology and Therapeutics. 38: 265-270.

Pairis-Garcia, M.D., A.K. Johnson, C.A. Anell, J.F. Coetzee, L.A. Karriker, S.T. Millman and K.J. Stalder. 2015. Measuring the efficacy of flunixin meglumine and meloxicam for lame sows using a GAITFour pressure mat and an embedded microcomputer-based force plate system. Journal of Animal Science 92: 2100-2110.

Pairis-Garcia, M.D. A.K. Johnson, K.J. Stalder, C.A. Abell, L.A. Karriker, J.F. Coetzee, S.T. Millman. 2015. Behavioural evaluation of analgesic efficacy for pain mitigation in lame sows. Animal Welfare. 23: 93-99.

Patra AK, Yu Z. 2015. Effects of adaptation of in vitro rumen culture to garlic oil, nitrate and saponin and their combinations on methanogenesis, fermentation, and abundances and diversity of microbial populations. Frontiers in Microbiology. 6:1434. doi: 10.3389/fmicb.2015.01434.

Patra AK and Yu Z. 2015. Effects of garlic oil, nitrate, saponin and their combinations supplemented to different substrates on invitro fermentation, ruminal methanogenesis, and abundance and diversity of microbial populations. J Appl Microbiol 119(1):127-38.

Patra AK and Yu Z. 2015. Essential oils affect populations of some rumen bacteria in vitro as revealed by microarray (RumenBactArray) analysis. Frontiers in Microbiology 6:297.

Paul SS, Deb SM, Dey A, Somvanshi SPS, Singh D, Rathore R, Stiverson J. 2015. 16S rDNA analysis of archaea indicates dominance of methanobacterium and high abundance of methanomassiliicoccaceae in rumen of nili-ravi buffalo. Anaerobe 35:3-10.

Rozman Grinberg I, Yin G, Borovok I, Miller ME, Yeoman CJ, Dassa B, Yu Z, Mizrahi I, Flint H, Bayer E, White B, Lamed R. 2015. Functional phylotyping approach for assessing intraspecific diversity of Ruminococcus albus within the rumen microbiome. FEMS Microbiology Letters, 362(3):1-10.

Sakomura NK, Silva EP, Dorigam JCP, Gous RM, St-Pierre N. 2015. Modeling amino acid requirements of poultry. Journal of Applied Poultry Research 24(2):267-82.

Scheffler TL, Matarneh SK, England EM, Gerrard DE. 2015. Mitochondria influence postmortem metabolism and pH in an in vitro model. Meat Sci 110:118-25.

Shanmugasundaram R, Kogut MH, Arsenault RJ, Swaggerty CL, Cole K, Reddish JM, Selvaraj RK. 2015. Effect of salmonella infection on cecal tonsil regulatory T cell properties in chickens. Poult Sci 94(8):1828-35.

Shin S, Choi YM, Suh Y, Lee K. 2015. Delta-like 1 homolog (DLK1) inhibits proliferation and myotube formation of avian QM7 myoblasts. Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology 179:37-43.

Shin S, Song Y, Ahn J, Kim E, Chen P, Yang S, Suh Y, Lee K. 2015. A novel mechanism of myostatin regulation by its alternative splicing variant during myogenesis in avian species. American Journal of Physiology-Cell Physiology 309(10):C650-9.

St-Pierre NR and Weiss WP. 2015. Partitioning variation in nutrient composition data of common feeds and mixed diets on commercial dairy farms. J Dairy Sci 98(7):5004-15.

Turner KE, Cassida KA, Zerby HN, Brown MA. 2015. Carcass parameters and meat quality in meat-goat kids finished on chicory, birdsfoot trefoil, or red clover pastures. Meat Sci 105:68-74.

Ujor V, Agu CV, Gopalan V, Ezeji TC. 2015. Allopurinol-mediated lignocellulose-derived microbial inhibitor tolerance by clostridium beijerinckii during acetone-butanol-ethanol (ABE) fermentation. Appl Microbiol Biotechnol 99(8):3729-40.

Ujor V, Bharathidasan AK, Michel FC, Jr., Ezeji TC, Cornish K. 2015. Butanol production from inulin-rich chicory and taraxacum kok-saghyz extracts: Determination of sugar utilization profile of clostridium saccharobutylicum P262. Industrial Crops and Products 76:739-48.

Veerasamy Sejian, Iqbal Hyder, T. Ezeji, J. Lakritz, Raghavendra Bhatta, J.P. Ravindra, Cadaba S. Prasad, and Rattan Lal (2015) Global Warming: Role of Livestock. Chapter in Climate Change Impact on Livestock: Adaptation and Mitigation (Eds: Sejian V, Gaughan J, Baumgard L, Prasad C) Springer India, Chapter 10. p. 141-169.

Velleman SG. 2015. Relationship of skeletal muscle development and growth to breast muscle myopathies: A review. Avian Dis 59(4):525-31.

Velleman SG and Clark DL. 2015. Histopathologic and myogenic gene expression changes associated with wooden breast in broiler breast muscles. Avian Dis 59(3):410-8.

Wang L, Gutek A, Grewal S, Michel FC, Jr., Yu Z. 2015. Changes in diversity of cultured bacteria resistant to erythromycin and tetracycline in swine manure during simulated composting and lagoon storage. Lett Appl Microbiol 61(3):245-51.

Wang JK, He B, Du W, Luo Y, Yu Z, Liu JX. 2015. Yeast with surface displayed xylanase as a new dual purpose delivery vehicle of xylanase and yeast. Anim Feed Sci Technol 208:44-52.

Wang L., Nasrin S., Liles M., Yu Z. 2015. Use of Bacterial Artificial Chromosomes in Metagenomics Studies, Overview, p. 671-680. In K. Nelson (ed.), Encyclopedia of Metagenomics. Springer, New York.

Wang Y, Lee K, Moon YS, Ahmadian M, Kim KH, Roder K, Kang C, Sul HS. Overexpression of pref-1 in pancreatic islet β-cells in mice causes hyperinsulinemia with increased islet mass and insulin secretion. Biochemical and Biophysical Research Communications. 461:630-635.

Weiss WP, Azem E, Steinberg W, Reinhardt TA. 2015. Effect of feeding 25-hydroxyvitamin D-3 with a negative cation-anion difference diet on calcium and vitamin D status of periparturient cows and their calves. J Dairy Sci 98(8):5588-600.

Weiss WP, Simons CT, Ekmay RD. 2015. Effects of feeding diets based on transgenic soybean meal and soybean hulls to dairy cows on production measures and sensory quality of milk. J Dairy Sci 98(12):8986-93.

Weiss WP, Wyatt DJ, Kleinschmit DH, Socha MT. 2015. Effect of including canola meal and supplemental iodine in diets of dairy cows on short-term changes in iodine concentrations in milk. J Dairy Sci 98(7):4841-9.

Wu H, Meng Q, Yu Z. 2015. Effect of pH buffering capacity and sources of dietary sulfur on rumen fermentation, sulfide production, methane production, sulfate reducing bacteria, and total archaea in in vitro rumen cultures. Bioresour Technol 186:25-33.

Yu Z and Morrison M. 2015. Serial Analysis of V1 Ribosomal Sequence Tags, p. 622-626. In K. Nelson (ed.), Encyclopedia of Metagenomics. Springer, New York. 10.1007/978-1-4899-7478-5_806.

Yu Z and Wright A-D. 2015. Terrestrial Vertebrate Animal Metagenomics, Domesticated Caprinae, pp. 655-666. In S. Highlander, F. Rodriguez-Valera, and B. White (ed.), Encyclopedia of Metagenomics. Springer, New York.

Zhang J, Ahn J, Suh Y, Hwang S, Davis ME, Lee K. 2015. Identification of CTLA2A, DEFB29, WFDC15B, SERPINA1F and MUP19 as novel tissue-specific secretory factors in mouse. Plos One 10(5):e0124962.

Zhang J, Suh Y, Choi YM, Chen PR, Davis ME, Lee K. Differential expression of cell cycle regulators during hyperplastic and hypertrophic growth of broiler subcutaneous adipose tissue. Lipids. 50(10):965-76.

Zhang X, Jiang A, Chen M, Ockerman HW, Chen J. 2015. Effect of different alkali treatments on the chemical composition, physical properties, and microstructure of pidan white. Journal of Food Science and Technology-Mysore 52(4):2264-71.

Zhang Y, Ujor V, Wick M, Ezeji TC. 2015. Identification, purification and characterization of furfural transforming enzymes from Clostridium beijerinckii NCIMB 8052. Anaerobe 33:124-131.

Zhao S, Wang J, Zheng N, Bu D, Sun P, Yu Z. 2015. Reducing microbial ureolytic activity in the rumen by immunization against urease therein. Bmc Veterinary Research 11:94.